Non-parametric bootstrap and permutation resampling-based multiple testing procedures for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Single-step and step-wise methods are implemented. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models) are included. Results are reported in terms of adjusted p-values, confindence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.
| Version: | 1.21.1 |
| Depends: | R (≥ 2.1.0), methods, Biobase, survival |
| Enhances: | snow, Rmpi, rpvm |
| Author: | Katherine S. Pollard, Yongchao Ge, Sandra Taylor, Sandrine Dudoit |
| Maintainer: | Katherine S. Pollard <kpollard at gladstone.ucsf.edu> |
| License: | LGPL |
| In views: | Genetics |
| CRAN checks: | multtest results |
Downloads:
| Package source: | multtest_1.21.1.tar.gz |
| MacOS X binary: | not available, see check log. |
| Windows binary: | multtest_1.21.1.zip |
| Reference manual: | multtest.pdf |
| Old sources: | multtest archive |